@TEHK, I might recommend using an app like Avidemux, or VirtualDub2 to just swap out the Audio stream in the recording. Both programs have amazing capabilities for post-processing, re-encoding and file re-MUX. Avidmux is the easiest to use over all, VirtualDub2's video flitter library is unsurpassed.
Now the topic of using these software for mastering you final publish products is an other story.
....can we has lossless video compression? lol